Scaffold JGI12270J11330_10003672

Overview

Basic Information

• Taxon OID: 3300000567
• Scaffold ID: JGI12270J11330_10003672
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10950
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000585	Metagenome / Metatranscriptome	1007	Y
F002584	Metagenome / Metatranscriptome	546	Y
F028228	Metagenome / Metatranscriptome	192	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12270J11330_100036723	F028228	AGG	MVAAACAAALVLGAIIYWTGVVRQTPPVQIASVTTPATLDLRPLTENRGLEQGRPSTPKPPLILPRKHLRLTLYFPVGADEGQYALQLLDGQLRTILKQHVTATLQDHIVTAVAELDLSALSPGLHTLAIRKSADEWRTYSVVLQ*
JGI12270J11330_100036725	F002584	N/A	MPVKPPPLVAPDSGGQSSEGFSCVSARAKDTVRRVRAYFRGRGSADLESITKDARALTPAQWSAALPEPRRNGKLIFLDRPSLERIADARPDPFETVYRQELVAFLEAQLPPEQVPYLDAFLADDGPKDIAPRLGISAKAASARMRRFQAKLGAILSGRTPRIKAPH*
JGI12270J11330_100036727	F000585	GAG	MNHLAKPRKAEADLGRQSKQLAEDECGLVAPDRLAQTITEFVEWRAFSYWLRLNVETQGFVSDPMIAILRERCPGFLDYASAFAKEHPREPEFLWLRFLEWTDERLFHVSIAEGWRHALGYYATRDPRMDQIRAHWKQCRRAWKLQPPAPFPSFEAWRESALQHR*