Scaffold JGI12270J11330_10002707

Overview

Basic Information

• Taxon OID: 3300000567
• Scaffold ID: JGI12270J11330_10002707
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12942
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F005112	Metagenome / Metatranscriptome	411	Y
F007120	Metagenome	357	Y
F020836	Metagenome / Metatranscriptome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12270J11330_100027074	F002761	AGGAGG	MTFTPSATSSFSAGAVFWGMVWATLGKLNELAHFVGFKKSNPRQTVLRWINAHKVVTITLTEAVNYSVHGISSPLGVTFALGGTLVNIFMVTFIVPIWCRLSKLESH*
JGI12270J11330_100027075	F007120	AGGAGG	MKNLIIVLSAACAVVAGYFGARHFTHRDLGFTPARKYVQRVAENLLHTELTAAREAGTTSAATTD*
JGI12270J11330_100027076	F005112	AGGAG	MSLVTRYRLFWAALVAALLGLAFWKNSQSYPRKSPLWRLGKAVIDTGLVVLMVLYAPALLLMYVVIWLTSSFKNKIMQSTAAFASILAITHLAGVVFEAVAVLGVFAVDLLTGQVAARMDRRERNRLAKAGGSVDLSGRHV*
JGI12270J11330_100027077	F020836	AGGAGG	MIRAWGMALLVGAGVGLFLGPHQVLAQACKDEVSMVEASKQSSVELTETVKKETLPDFQRLNHQKSVVNKLAIHDSMLGGLVSCLDKAAQDTTAPKEQVEAAKAQHDAAAKLQEKLQHARVAIKDAQAPKDAKALIEKLDVTP*