Scaffold JGI12270J11330

Basic Information
Taxon OID	3300000567 Open in IMG/M
Scaffold ID	JGI12270J11330_10000596 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Weissenstadt, Germany - SII-2010
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300000567 Open in IMG/M

Scaffold ID

JGI12270J11330_10000596 Open in IMG/M

Source Dataset Name

Peat soil microbial communities from Weissenstadt, Germany - SII-2010

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	27564
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (85.71%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

27564

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (85.71%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.13	Long. (^o)	11.88	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Germany: Weissenstadt

Coordinates

Lat. (^o)

50.13

Long. (^o)

11.88

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000885	Metagenome / Metatranscriptome	849	Y
F015120	Metagenome / Metatranscriptome	257	Y
F076450	Metagenome	118	N
F079694	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
JGI12270J11330_1000059611	F015120	AGG	MWEFVKRFFKTRYVGMLEEEVARLRGENRALLNSLLGTAGFPPVEFAEPVKPVELPRLRKRSWQQMQRKNELDAMKG*
JGI12270J11330_1000059616	F000512	GAG	MIEFVREIHETPGEVARRLEMAGGRNRFGEANYRVIWGWNRLAWIGGKFEDRDTHGDLVREVVELRLEPKYPQVNRWHVERWVPPETYGPPREWYAKTVDTANGVSVPALGPYPERGEYEHCFTLQGPKGEFVQLTPTLVEHVARAIEWARRFPKAKQRGMLYERAAREEREYEEWAYTLMDDAAPALHGAPFVTVA*
JGI12270J11330_100005962	F079694	AGGAG	MPTYQNATPPNTLYPGDVGYSWNNEAFPGANTSGTQFALSTPGGYAPETGFTVRWQTIFGGAPSAISIKLQGAMADVDAEYQDMDASTQVTGEARQVTGVQAKFLRIKLYSSTGGSGLTAKILV*
JGI12270J11330_100005963	F076450	N/A	MRGDSQGRSVQIGRYLNAPIALNVGVTSASVQLNPSRHYRLWGSVDLFFQFGPTGVTATLNSHPAAAKLDYLHYTDDTNTTLAAIVSSGTGVLFISEIDAQGV*
JGI12270J11330_100005969	F000885	AGGAG	MTTAKVVFIGEVAQIAGVAAVVLGVVLSLHHWGAAASLVGGIGAFFVGKKLRGA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI12270J11330_10000596

Overview

Ecosystem & Geography

Associated Families

Sequences