Scaffold JGI12270J11330_10000332

Overview

Basic Information

• Taxon OID: 3300000567
• Scaffold ID: JGI12270J11330_10000332
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36656
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (48.48%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000359	Metagenome / Metatranscriptome	1236	Y
F000985	Metagenome / Metatranscriptome	813	Y
F011689	Metagenome / Metatranscriptome	288	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12270J11330_1000033220	F011689	GGA	MSRVSPNRGGFVRAVVVLCVALVCVMGTVQATHSHPENSTRSHHTCSICATAHAGLNTQTVAAAPVLATAALASSVLEVSLIFRPATTQFIRPPPVF*
JGI12270J11330_1000033222	F000359	N/A	MRALRSQTQGEVIMAGQVILYFDDQADALRFALAAGSVMAGDATRATGDLVQETARVTRIRLDAANKEKGKQPNPPERAA*
JGI12270J11330_1000033230	F000985	AGG	MKNVYEVLRQKELELTRLEKEVEALRIAAPLLSEEKETLAEAPKPSLTTTTTPPQPVRVPSVVAAQAANPPARVAGWEDAAKRWP*