Scaffold SL_3KL_010_SEDDRAFT_10033245

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SL_3KL_010_SEDDRAFT_10033245

Scaffold SL_3KL_010_SEDDRAFT_10033245

Overview

Basic Information
Taxon OID	3300000563 Open in IMG/M
Scaffold ID	SL_3KL_010_SEDDRAFT_10033245 Open in IMG/M
Source Dataset Name	Alkaline sediment microbial communities from Cock Soda Lake, Kulunda Steppe, Russia - 3KL_010_SED
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	3822
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (7.69%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment → Alkaline Sediment → Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils

Source Dataset Sampling Location
Location Name	Russia: Kulunda Steppe, Cock Lake
Coordinates	Lat. (^o)	52.06	Long. (^o)	79.09	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011397	Metagenome / Metatranscriptome	291	Y
F020177	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
SL_3KL_010_SEDDRAFT_100332453	F020177	N/A	MADISIDNTYWDRVRGFVSELRVDARWILRKEDDEKPYGSLRIVSHPDLKPGHLRAYFTYVTTIKPKTRKEKLQTVEDFEVNLMELEVYSIDENIDTEMKIYEAPMRELQELFDVKLFE*
SL_3KL_010_SEDDRAFT_100332459	F011397	N/A	MQQFELLKRTYPTSTFDRYCDGYDFILKNSTVEXRKXWGIXDSXLQRVIKKNEKYIYQVAKENKAFKVMHLSFKNYEIIRKKIFGLDDK*

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