Scaffold SL_3KL_010_SEDDRAFT_10010429

Overview

Basic Information

• Taxon OID: 3300000563
• Scaffold ID: SL_3KL_010_SEDDRAFT_10010429
• Source Dataset Name: Alkaline sediment microbial communities from Cock Soda Lake, Kulunda Steppe, Russia - 3KL_010_SED
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 7970
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctgsk7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment → Alkaline Sediment → Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils

Source Dataset Sampling Location

• Location Name: Russia: Kulunda Steppe, Cock Lake
• Coordinates
  • Lat. (^o): 52.06
  • Long. (^o): 79.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035190	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
SL_3KL_010_SEDDRAFT_100104295	F035190	N/A	MIKDIYIRNPQDPNFIYGVLDHSDPIESIISKIKMIFGTRQGQVFGDMNFGVGLEDLVFETRINKNELEERIKKQIQQYVSESSKYRIDAEISFGKGDGYDFAVIDIYIDRVKSLGILIR