Scaffold F14TC_100934028

Overview

Basic Information

• Taxon OID: 3300000559
• Scaffold ID: F14TC_100934028
• Source Dataset Name: Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1311
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location

• Location Name: Kanza Prairie, Kansas, USA
• Coordinates
  • Lat. (^o): 39.100992
  • Long. (^o): -96.608258

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014716	Metagenome	260	Y
F032714	Metagenome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
F14TC_1009340282	F032714	AGG	VIVVLPHDTIVRILDHEPTTPGAASGVGSRRAASPLPSEAAPALSEDIIDALNKAKTDKAKLVGPLEPSEFNALSAWCRIIGLTKEAETVEAAVRASG*
F14TC_1009340283	F014716	AGG	MVVTLPIVTIKRILDRVSSLPEPASEFILGEALARVLHADVEXNRPIQATKPLSKLPENIVSALEKARDDNTLIGDGKRVGHLRRDDFTTLRDWCRAMRLGSDAAAVEAAVTATPE*