Scaffold F14TC_100238743

Overview

Basic Information

• Taxon OID: 3300000559
• Scaffold ID: F14TC_100238743
• Source Dataset Name: Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7793
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location

• Location Name: Kanza Prairie, Kansas, USA
• Coordinates
  • Lat. (^o): 39.100992
  • Long. (^o): -96.608258

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004909	Metagenome / Metatranscriptome	419	Y
F013909	Metagenome / Metatranscriptome	267	Y
F103960	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
F14TC_10023874310	F004909	GAGG	VLFVNPTWFYPALPPVEMPIGLSHLDSDFCWCDPIVEVDENGQEAVLHREVTWN*
F14TC_10023874311	F103960	GGAGG	VEFKTKIFVMAFSLFSLLSFATPTHSELIQTSERTSQEILSALATEQHSLALVSLSPLVVNGKTLGEVLVYDDPTTKRPVDYLALYDSAGDLVALGWFDQFGIQRIAVDRGLLDEGDELEGVFVFFLDGDSI*
F14TC_1002387436	F013909	GGAG	MNTKKERFSMDLSLVPLLLGGQSISPEARQALGENRLDDAAAILMKEYGLSCVEAGHLLDVSVCEDE*