Scaffold F14TC_100116004

Overview

Basic Information

• Taxon OID: 3300000559
• Scaffold ID: F14TC_100116004
• Source Dataset Name: Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1984
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location

• Location Name: Kanza Prairie, Kansas, USA
• Coordinates
  • Lat. (^o): 39.100992
  • Long. (^o): -96.608258

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025584	Metagenome / Metatranscriptome	201	Y
F035065	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
F14TC_1001160042	F025584	GAGG	MGDARLDAQPGWGVFWIHYEAEELRVHYRATIPAEDARALVVTLLTSGRVPPLQGTLFEAESAAARPGLQRFWGTACRSGEVVYLILFINERCLVLTLAQ*
F14TC_1001160043	F035065	GGAGG	MTDREVEAISDFLRHFGSFGCRQICVRRTEPKPRTPEEVGAFVLDTVATWRAEGLDAERLYRVVTIAIHFDAYKLPATICMPACCRPWAALEPACPPGPGRPLTDAQLQQALLRAVSIGPPPAPDAPLSHDLDEDLKRTGLAP*