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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300000558 Open in IMG/M |
| Scaffold ID | Draft_10004047 Open in IMG/M |
| Source Dataset Name | Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - West In Pit SyncrudeMLSB2011 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | McGill University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8395 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (84.21%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Syncrude, Ft. McMurray, Alberta | |||||||
| Coordinates | Lat. (o) | 57.02 | Long. (o) | -111.55 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003863 | Metagenome | 464 | Y |
| F004110 | Metagenome | 452 | Y |
| F006653 | Metagenome / Metatranscriptome | 367 | Y |
| F013279 | Metagenome / Metatranscriptome | 272 | Y |
| F040479 | Metagenome | 161 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Draft_1000404713 | F004110 | AGGAG | MAWAMTRVEDHTVDLMEPIEDRRRHNEQRIAWQMRRVAERYARKEKAAKSGYQTNDEAYYESATLGQLLPFVIASVIDGTVLEQAQEMIRDGQPKGSSSPAEGGNLLANLIDIKKGFLXXDQEXQAILRMRHHESFTLQQIAQVLECAISTADRRCSQSMRRLQDNLGGVSPWQ* |
| Draft_1000404715 | F013279 | GAGG | MQYDYRCPQCNSELTIERSIHEDPREPSCFDCHIPMVRKWDSPAITFKGKGFYSNGG* |
| Draft_1000404717 | F040479 | GGA | VNPASTTLLAQETLRANQEAQLLELLNSLESVVDNLNYKSFTVYDTLNTAIQGVRAALSGIAIEEGGTDE* |
| Draft_1000404718 | F003863 | GGAGG | MESKEVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWIINPDSRLTVGIHTRANTPPPFGDPADAGADESYXGGEA* |
| Draft_100040477 | F006653 | AGGAGG | MSEQLSNKYRDNLRIDAVRDATNALRAELDALKVDVTNFVGALLQSGVVELVKDEEGNIVYKINKVVLVDESVQQD* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |