Scaffold TBL_comb47_HYPODRAFT_10011565

Overview

Basic Information

• Taxon OID: 3300000553
• Scaffold ID: TBL_comb47_HYPODRAFT_10011565
• Source Dataset Name: Trout Bog Lake May 28 2007 Hypolimnion (Trout Bog Lake Combined Assembly 47 Hypolimnion Samples, Aug 2012 Assem)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8370
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023521	Metagenome / Metatranscriptome	209	Y
F098647	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
TBL_comb47_HYPODRAFT_1001156510	F023521	AGGAG	MKDAIIYAGYSRLADGTMKFRTATNEARVNQLVAFGEEVHMILINPVYSKSAAAKELLRLDHANGARALEQFYTKFVKDENPFRVVKVKVPTVFMQQLTGAKIEEEPMTAKEARKIRAEFNRKVKEAYEAN*
TBL_comb47_HYPODRAFT_100115654	F098647	AGGAG	MFNFKSVVDQVAQASKTPLTYVEDKGIRANLETLIDSYADFTKSVYDTSLELSKQAVEATKNVDYSKFFAVAK*