Basic Information | |
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Taxon OID | 3300000553 Open in IMG/M |
Scaffold ID | TBL_comb47_HYPODRAFT_10009762 Open in IMG/M |
Source Dataset Name | Trout Bog Lake May 28 2007 Hypolimnion (Trout Bog Lake Combined Assembly 47 Hypolimnion Samples, Aug 2012 Assem) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9511 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (95.24%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F016143 | Metagenome | 249 | Y |
F016248 | Metagenome | 248 | Y |
F058000 | Metagenome | 135 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
TBL_comb47_HYPODRAFT_1000976210 | F016248 | GAGG | MEKKELSGLARQLLQSSGSQVFFTQAEFDDALALAQAEIMHVAVETTRQAILIEREECAKLADACVDIEKLGEAIRNRIPSQRQ* |
TBL_comb47_HYPODRAFT_1000976212 | F016143 | AGGA | MKTDYVYTPAGTDIAIRWKAMGWVPPSELPEYQKKWKFYQELPMRKLDDNAKQEYEAVMRKAKVARIK* |
TBL_comb47_HYPODRAFT_1000976215 | F058000 | AGGAG | MTTATLIQATATVESLANPIDTLAVLDRQVKDLTAQTKVLKDQLANQYGEGKFRGEKYGVRITIENRKGTIDMDALLAHFGITAEQAEQFRGPSSAIIKVAPTV* |
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