Scaffold TBL_comb47_HYPODRAFT_10005916

Overview

Basic Information

• Taxon OID: 3300000553
• Scaffold ID: TBL_comb47_HYPODRAFT_10005916
• Source Dataset Name: Trout Bog Lake May 28 2007 Hypolimnion (Trout Bog Lake Combined Assembly 47 Hypolimnion Samples, Aug 2012 Assem)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 13430
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (60.61%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015302	Metagenome	255	Y
F021920	Metagenome / Metatranscriptome	216	Y
F030333	Metagenome	185	Y
F034448	Metagenome	174	Y
F040990	Metagenome	160	Y
F079586	Metagenome	115	Y
F089853	Metagenome	108	Y
F100256	Metagenome	102	Y
F104347	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
TBL_comb47_HYPODRAFT_1000591611	F030333	AGGTGG	VAIDRNPVLTIPVKTYTHYSECEPWCNVNIGNWNENWWKDFPDIAMSVVVEGPHEDCYWFANERDALMFRLRFR*
TBL_comb47_HYPODRAFT_1000591613	F034448	N/A	MHVNNWTLPRPPEEVLAQCQEVIVNDPAFRMWAMKKYCKENNLSLVWSELVDTSDTSAFFDEAAAFYFIDPADATLFRLKYK*
TBL_comb47_HYPODRAFT_1000591614	F015302	GGTGG	MSQDDIKSRLAKFREQLPAESKDEYYADTAARLDTIIGGDTQHFQRLQRVKNEWDALADAVPVGQGFLTFDDYVREYYGVKLVYDGDNVSLAYSIVDEKKHLVFILKFNR*
TBL_comb47_HYPODRAFT_1000591615	F040990	GAGG	MNYYYEISEKYDGTIFGDKWRYWCMYNCSPADNGKMCFKTHDDFVARSSRVWLENANGVYQVHPKWHEFRGYVDPHEFTIVKLKAKTIKWWHDEPG*
TBL_comb47_HYPODRAFT_1000591618	F100256	N/A	MIRVSTKDEAFNQAWCNAHRALPVWELERPRQYGQRWREAYRCRVDPTDSKLGETYYIFDRDEDYTWFMLKWG*
TBL_comb47_HYPODRAFT_1000591619	F089853	GAG	MKIASVMAPVVNSDPISGHRYQGWTPCIEWCDANCEGPWLFITEGVFEFEWDSDYVMFLLKWT*
TBL_comb47_HYPODRAFT_1000591631	F021920	AGG	MAKQQQTASELSRTLAGKWTKSEKRAEASRQITASKASAHAKIKAFKQGIFLNK*
TBL_comb47_HYPODRAFT_1000591632	F079586	AGGAG	MKSRIESRSSQIDTEKCVDHAGGRYDLVIAAAQRLRELKRRSRETNNIYVTPIDALLEVQSGQLDMINYMAKVK*
TBL_comb47_HYPODRAFT_100059165	F104347	GGAG	MNSIKAFFLKNQKEITWFLIGFLTLSGLQDLGHGDYVGALISFALVYINYKLN*