Scaffold TBL_comb47_HYPODRAFT_10003827

Overview

Basic Information

• Taxon OID: 3300000553
• Scaffold ID: TBL_comb47_HYPODRAFT_10003827
• Source Dataset Name: Trout Bog Lake May 28 2007 Hypolimnion (Trout Bog Lake Combined Assembly 47 Hypolimnion Samples, Aug 2012 Assem)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 17624
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (68.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001443	Metagenome / Metatranscriptome	693	Y
F052309	Metagenome	142	Y
F072912	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
TBL_comb47_HYPODRAFT_100038272	F052309	AGGA	MTLDEINQQLVNLTNCGDPQFAQAAQYVTQATQAAQAGQMTPQELTETLQDLQRQMEIIQDMSRLQFKETLNTVINGLITIAGFAL*
TBL_comb47_HYPODRAFT_1000382724	F001443	GAG	MYETTVRTPAGETKDRVFASNAQEAKKLFEQRHGPRNVPYIPHMIPS*
TBL_comb47_HYPODRAFT_100038274	F072912	AGGAG	MKRLIVISLFLLTACAGNKAPMIPKWPDAPADLQTPAQDLTPLAPEQHNLSDLIANANDNYAQYYVLKEKYEGWQSWYNSQKKIQEGLK*