Scaffold TBL_comb47_HYPODRAFT_10003162

Overview

Basic Information

• Taxon OID: 3300000553
• Scaffold ID: TBL_comb47_HYPODRAFT_10003162
• Source Dataset Name: Trout Bog Lake May 28 2007 Hypolimnion (Trout Bog Lake Combined Assembly 47 Hypolimnion Samples, Aug 2012 Assem)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 19756
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (82.76%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034813	Metagenome	173	Y
F083677	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
TBL_comb47_HYPODRAFT_1000316255	F083677	GGA	MSIDNQTELESAQSIFSDFHKDYYGFRPRFATEEQWNSIEWLDEQIKAIHDAMDERKKTPEGRASLRDEGWYIDESEFV*
TBL_comb47_HYPODRAFT_1000316256	F034813	GAG	MSYDSDFESVYMVEFESGRTIHVQFFDVQEVKEYCADNHAGDIIKSIYKEVYNNFAEAE*