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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300000553 Open in IMG/M |
| Scaffold ID | TBL_comb47_HYPODRAFT_10002046 Open in IMG/M |
| Source Dataset Name | Trout Bog Lake May 28 2007 Hypolimnion (Trout Bog Lake Combined Assembly 47 Hypolimnion Samples, Aug 2012 Assem) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 25306 |
| Total Scaffold Genes | 38 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (81.58%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008072 | Metagenome / Metatranscriptome | 339 | Y |
| F009735 | Metagenome / Metatranscriptome | 313 | Y |
| F016782 | Metagenome / Metatranscriptome | 244 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| TBL_comb47_HYPODRAFT_1000204616 | F008072 | N/A | MKRKVSKDRRYKRSIWTQNQKLXAVSTYLMLGNMAETAVVTGIPLQTLKIWKTTDWFKDYSLQLQSEDVQQMDSNLKRVIQKALKATEDRIDLGDAQFDQKTGEIVRIPIKAHVALKITTELLTKQQKLNENPIKEEVEKTIDSRLLKLSEEFARFANARANTIEIEAVDVTPNTTSIEA |
| TBL_comb47_HYPODRAFT_1000204627 | F016782 | AGGAG | MSTEASTLYVAATESLVSESSATSTFEKMIAVAFTHSSGETFTKELRETEKQIKKDFEISSMPGPWRSAKSVIQTALKMGIGLVDDNGGFYGKTHLQNTIKALKTDVKEPLTNEAYATKVCSLLCNVPEELDAKKVYKXVITFLEGVV* |
| TBL_comb47_HYPODRAFT_1000204634 | F009735 | N/A | MMTGVVEATSTKEVNTKFGAKPTYSMKVNGNWVKCGFKDPGVQAGYEVEFDGVTGTYGMETKVVSILKKTATPVPATLATDSKVGVLGPSKHGYSGYKEKVFPIPPLHGDRAIVRQNALARATDLYIAARGGKSFELEMSTLELVIALARKFESYTAGDIDMAEAMKEDSEENIAAQE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |