Scaffold F24TB_15564982

Overview

Basic Information

• Taxon OID: 3300000550
• Scaffold ID: F24TB_15564982
• Source Dataset Name: Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 978
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location

• Location Name: Kanza Prairie, Kansas, USA
• Coordinates
  • Lat. (^o): 39.100992
  • Long. (^o): -96.608258

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004218	Metagenome / Metatranscriptome	448	Y
F008774	Metagenome / Metatranscriptome	328	Y
F019902	Metagenome / Metatranscriptome	227	Y

Sequences

Protein ID	Family	RBS	Sequence
F24TB_155649821	F008774	GGAG	MTDEEIERFALVLKECERIRALIAREEAALSNGEHDDGIPIAAAPPEQRPPGLTRW*
F24TB_155649822	F019902	AGGTGG	LREKVLRDLASRAATDAGFLKQARRXXXGTLAGFGYDLTLEELRLVEDLRRRTAAMSDEQLARXXXXXXXXXXGPPPARPAAPSWRXXXXXXPARPGG*
F24TB_155649823	F004218	AGGA	VAKTFELDTMVSPSSLLARAKKAAYANGATLLGDEHSGRFSHEMAKGEYRMVGQKVIVTVTDKHWLLPWPVVEAQLR