NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LJNas_1001106

Scaffold LJNas_1001106


Overview

Basic Information
Taxon OID3300000546 Open in IMG/M
Scaffold IDLJNas_1001106 Open in IMG/M
Source Dataset NameQuercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN_Illumina_Assembled
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI), Lifesequencing S.L.
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4151
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere → Quercus Rhizosphere Microbial Communities From Sierra Nevada National Park, Granada, Spain

Source Dataset Sampling Location
Location NameSierra Nevada National Park, Granada, Spain
CoordinatesLat. (o)36.96971Long. (o)-3.46027Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038174Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
LJNas_10011063F038174GAGGMARASGLLLLFVAATTAAAAWPQDLPSQPKPDGKVCVAVVSNMSARSALPDRLTERLSKNLRDNKIKAMAMDSTTTTDYNLHPSGDNGEEAKSRGCDYILLTQIVDPNTHPLDPQGPQISIGGKVPSTDASDPLGGSSGPVHRDNLQISFALFPIERLKPIVDTVIMAQPSGSVSDNLLPAMDRESNRISHELKKK*

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