Scaffold LJNas_1000092

Overview

Basic Information

• Taxon OID: 3300000546
• Scaffold ID: LJNas_1000092
• Source Dataset Name: Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN_Illumina_Assembled
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI), Lifesequencing S.L.
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13362
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere → Quercus Rhizosphere Microbial Communities From Sierra Nevada National Park, Granada, Spain

Source Dataset Sampling Location

• Location Name: Sierra Nevada National Park, Granada, Spain
• Coordinates
  • Lat. (^o): 36.96971
  • Long. (^o): -3.46027

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010268	Metagenome / Metatranscriptome	306	Y
F020407	Metagenome / Metatranscriptome	224	Y
F026653	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
LJNas_100009210	F010268	GAGG	MATMIASPPDEKTSQASNRLAGKGNRRARHAGEDETMSGARFFLPKSGAGHAPELGREFSNEGEARVEALKLGVTYYSLHEWRPVADFAGKNPELKREPVTRKGSG*
LJNas_10000925	F026653	AGGA	MLRKLEALTFFLAMMLAVTLEGAVVYWLFGHSLVHAAPDGSLNVVGEWTGFALPQGWLFGALLVLIYRVTAMLIPPRCWTDSELMHNRRAFVRLWYLAMALVAMQGVLFLVGNLSAAS*
LJNas_10000929	F020407	AGGAGG	MVKQRFLTHFKPWLFAVIKVVGLIVGYQLFDKTRTYFQYVPLNSVDVVVAATVALLAIGLLCGLWAWGEWCWFKLRSLRLFCSKLKQAFDNRRRPRTIRTSRSVAGTMV*