Scaffold LJNas_1000023

Overview

Basic Information

• Taxon OID: 3300000546
• Scaffold ID: LJNas_1000023
• Source Dataset Name: Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN_Illumina_Assembled
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI), Lifesequencing S.L.
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20717
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere → Quercus Rhizosphere Microbial Communities From Sierra Nevada National Park, Granada, Spain

Source Dataset Sampling Location

• Location Name: Sierra Nevada National Park, Granada, Spain
• Coordinates
  • Lat. (^o): 36.96971
  • Long. (^o): -3.46027

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000414	Metagenome / Metatranscriptome	1169	Y
F001347	Metagenome / Metatranscriptome	718	Y
F035387	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
LJNas_100002314	F001347	AGGAGG	MASAAMAYGERRFEAAYTVRIVLALVALGLLAGLWSAQNKAGTSAPPTLLWISVGVMVTVAGLWIALGKTVLIINDSGVRRESILGQQEITWSQIAETRYRVIPISVYAHFGLIGALVAMSSKSNRAQLTLELIGQDRRKLKVTSIFQKAEEAIGIILSRILPPMVETAKARLQRGETVQFGGIGLSATNLSWKGTSIPVSEITKAELVRSNLQIKRQGKWLSAISVRSDKVPDVLVFLEVLESLAPQVKTAGVDPLARVRM*
LJNas_100002317	F000414	AGGAG	MSAPSRRPEIRRRRARQHKITTLRKRLAAAQNDADRSRVTAKLHKLAIASPGQPLVK*
LJNas_10000235	F035387	AGGAG	MVAVAFLALVILALINIAFWWVMRIRLMRVDPARDRIEWLSFRSGDDVLDTYAALFPDSVLPRCCRFAFWTAIVSAAIVLCAMTVLKAFGK*