Scaffold CNAas_1000067

Overview

Basic Information

• Taxon OID: 3300000532
• Scaffold ID: CNAas_1000067
• Source Dataset Name: Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNA_Illumina_Assembled
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI), Lifesequencing S.L.
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7805
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere → Quercus Rhizosphere Microbial Communities From Sierra Nevada National Park, Granada, Spain

Source Dataset Sampling Location

• Location Name: Sierra Nevada National Park, Granada, Spain
• Coordinates
  • Lat. (^o): 36.96213
  • Long. (^o): -3.41928

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002416	Metagenome	561	Y
F066243	Metagenome	127	N
F081922	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
CNAas_10000672	F081922	GAG	MRERGNIWPVVAVAAAALCVLVIIPLIIERQKAGRMATVDAHVSIGDGEIAGDQVSAAKNYRWPNGEVPRTAERLRDVTGVTIAAATFLVEESLHRRMPRDADEILTGIVRRRLIPNVWRTDQPGVLRTPHATIHLRYAPRSLTVELISVPNERVDGPAILIRIPDGENTAVGTRYFESMQLDGIIYPRPFASIADVIAAGWQPRLFKQTQLADADRVRLEQWAEATKRRQPNEE*
CNAas_10000678	F002416	AGGAG	MNYLIQTINAPTLSSSCAVRIGRRLVTIGFGMKAAHGVVAVILSILLGVVSVSAQTPSGQFFNGDSAQLGNSLRSVTFFLAAAMIIAGIIFVAVGIITSGLRESLSTWKFITGAACFAFGGICAAIYAFSQGETVPLDNSF*
CNAas_10000679	F066243	GGAG	MRARPIRPNIYLPVVRFGVADSDWFSVLLISCIAYLAPVPFGITLLYVPLQMWTWLLATAGAIAFFNYIRIGRKPYWLQH