Scaffold JGI1221J11331_1008873

Overview

Basic Information

• Taxon OID: 3300000525
• Scaffold ID: JGI1221J11331_1008873
• Source Dataset Name: Hypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2787
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location

• Location Name: Lake Vida, Antarctica
• Coordinates
  • Lat. (^o): -77.38861
  • Long. (^o): 161.931111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009746	Metagenome / Metatranscriptome	313	N
F029096	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI1221J11331_10088732	F009746	GGA	MCVVILANLVTLRDNLATTLKAAGRVVYSFPNENITPPAIVLVPGSPYITVSAIGGARLNVRFDITCIVGAADNRAALANIEALILSVTDLLANTNALLDGWNQPTVQQIGNSEMLISQISIELVTTN*
JGI1221J11331_10088735	F029096	AGGA	VAETRETIIYQPDMAQFRGLLKALSQMGKEANDELKNDVQSISMWTAGEIKKAAYAHPFMPKQAAIVAPTVRGNRDRLPNVTIGGSRGRASGGANAGQLLFGNEFGGERNAFGNKTAFPNGGYRFPPRSERVGRGNAGYWIFPTLKGAQGEITQRWKDAVTKVEDNWKKGPGGSG*