Scaffold Foulum_1032467

Overview

Basic Information

• Taxon OID: 3300000510
• Scaffold ID: Foulum_1032467
• Source Dataset Name: Anaerobic digester microbial communities from Northern Denmark, sample from Foulum manure
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Aalborg University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1163
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester → Anaerobic Digester Microbial Communities From Soeholt, Denmark

Source Dataset Sampling Location

• Location Name: Soeholt, Denmark
• Coordinates
  • Lat. (^o): 56.496244
  • Long. (^o): 9.599689

Associated Families

Family	Category	Number of Sequences	3D Structure?
F084123	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Foulum_10324672	F084123	AGGAGG	LSLTNSERPWLIRQFAEMALDLEAIKEDIRHEYHAWSAELAASSQLYNGDDETSSKAARIVDLEARILAKVTDEHRSLAIQVFRLVQQWLEQLDAATRRHIVEGGPPRQRFVDRVVQYTMCQINT*