NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Foulum_1009810

Scaffold Foulum_1009810


Overview

Basic Information
Taxon OID3300000510 Open in IMG/M
Scaffold IDFoulum_1009810 Open in IMG/M
Source Dataset NameAnaerobic digester microbial communities from Northern Denmark, sample from Foulum manure
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAalborg University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1368
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester → Anaerobic Digester Microbial Communities From Soeholt, Denmark

Source Dataset Sampling Location
Location NameSoeholt, Denmark
CoordinatesLat. (o)56.496244Long. (o)9.599689Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084123Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Foulum_10098102F084123AGGAGGLSLANSERPWLIRQFAEMALDLEATKEDIRHEYRAWFAELAAGSQLYSEDNETFSKAARIVDLEARILAKVTDEHQSLAIQIFRLVQQWLERLDVATRRCIFEGGSSRQQFIDRVVQHIMCQRNT*
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