Scaffold Soeholt_1034945

Overview

Basic Information

• Taxon OID: 3300000506
• Scaffold ID: Soeholt_1034945
• Source Dataset Name: Anaerobic digester microbial communities from Northern Denmark, sample from Soeholt sludge
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Aalborg University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4332
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Thermodesulfobacteria → Syntrophia → Syntrophales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Anaerobic) → Activated Sludge → Anaerobic Digester → Anaerobic Digester Microbial Communities From Soeholt, Denmark

Source Dataset Sampling Location

• Location Name: Soeholt, Denmark
• Coordinates
  • Lat. (^o): 57.363486
  • Long. (^o): 10.268131

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057400	Metagenome / Metatranscriptome	136	Y
F083899	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Soeholt_103494511	F057400	N/A	SAIIVVTLALILCGLYWSQMTKVRQDIMSKSDEDYILMVLRAKGADDCVLREVRPGVWSCTEFKSGKIFMVRR*
Soeholt_10349454	F083899	GAG	MATATYYQLHRARLLELARIYREKNREEINRKQRERYATNNEYRQYQLSYQAEYNRLYGHNRSV*