Scaffold Soeholt_1005883

Overview

Basic Information

• Taxon OID: 3300000506
• Scaffold ID: Soeholt_1005883
• Source Dataset Name: Anaerobic digester microbial communities from Northern Denmark, sample from Soeholt sludge
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Aalborg University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2302
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Anaerobic) → Activated Sludge → Anaerobic Digester → Anaerobic Digester Microbial Communities From Soeholt, Denmark

Source Dataset Sampling Location

• Location Name: Soeholt, Denmark
• Coordinates
  • Lat. (^o): 57.363486
  • Long. (^o): 10.268131

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015605	Metagenome / Metatranscriptome	253	N
F045118	Metagenome / Metatranscriptome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Soeholt_10058835	F045118	N/A	MREHGLETSELPETMRFEHRALKKEKVRTLYGFTRVNELFHGGYEVVKEKQVESWKNSLFSFSAEEVVVLGSKQLEQEMKAFQEKFGSNWFQYFLRSYGAYSLAKFAGKEVVRAALENLNSERTKVWRTMKLLEEAERELLVLKQEEGSSKTLGELYEELRGKVCELAGRN*
Soeholt_10058836	F015605	GAGG	MIDTLKLMLSDYEVSPESSVRVQPASYEVATGEKVEYPLFRNEAGTFYGSKAYLNTENWNLTLKPLPAGNRGVGAFLQFSVPKNYYGSNYFSVGEAGTRAALKKVEGELVQNGVFTNLEEAELSRIDTFKNIEPEEPFSSYFSLFSLLKARXXYMISCRK*