Scaffold M940CN_1007716

Overview

Basic Information

• Taxon OID: 3300000504
• Scaffold ID: M940CN_1007716
• Source Dataset Name: Microbial Communities from Little Sippewissett Salt Marsh, Woods Hole, MA that are anoxygenic and photosynthetic, Marine photosynthetic community that grows at 940nm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 666
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Salt Marsh Microbial Communities From Little Sippewissett, Woods Hole, Ma That Are Anoxygenic And Photosynthetic

Source Dataset Sampling Location

• Location Name: Little Sippewissett Salt Marsh, Woods Hole, MA
• Coordinates
  • Lat. (^o): 41.5758508
  • Long. (^o): -70.635807

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088355	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
M940CN_10077162	F088355	AGGAG	MKNLTNKISVFVGRKGQLVLAILTIAIFVLAAGAPNATLGIGR*
M940CN_10077163	F088355	AGGA	MKNLSNKISVFVGRKGQLVLAILTIALFVLAAGAPNATLGIGR*
M940CN_10077164	F088355	AGGAG	MKNLTNKISVFAGKKGQLVIAILTIALFVLAAGAPNATLGIGR*