Scaffold AAW_1008079

Overview

Basic Information

• Taxon OID: 3300000494
• Scaffold ID: AAW_1008079
• Source Dataset Name: Anaerobic digester microbial communities from Northern Denmark, sample from West Aalborg sludge
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Aalborg University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1482
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Anaerobic) → Activated Sludge → Anaerobic Digester → Anaerobic Digester Microbial Communities From Soeholt, Denmark

Source Dataset Sampling Location

• Location Name: Soeholt, Denmark
• Coordinates
  • Lat. (^o): 57.045078
  • Long. (^o): 10.047414

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054825	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
AAW_10080792	F054825	AGGAG	MSTHPTDRNLDLWLIDKDAEGVLKPGPGVVYDRAGLGIVFMDDRGRDFTFIDTGVALEVFAGQGARLTPALARDLAAALERFADYADGLTAYVPTSAAAT*