Scaffold TBL_comb48_EPIDRAFT_1069309

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold TBL_comb48_EPIDRAFT_1069309

Scaffold TBL_comb48_EPIDRAFT_1069309

Overview

Basic Information
Taxon OID	3300000439 Open in IMG/M
Scaffold ID	TBL_comb48_EPIDRAFT_1069309 Open in IMG/M
Source Dataset Name	Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1127
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.0412	Long. (^o)	-89.6864	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002722	Metagenome	534	Y
F080791	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
TBL_comb48_EPIDRAFT_10693091	F002722	N/A	SSCQATSCAVPKDALMAAGRANLRSTLYSYLVGAAIPTLNQVFTSFPKRINYQVNATAGQMSRAAAVIFIQSERETRLAIGGATNGWKRVDYTVVLQIFHHSLQNNAEDAMADFDTLVDNIKGTLRASHNFGDSSQVNVWQGAEPAIDCLYGEPVTSDNGATETFAEIRFDVTQMIQA*
TBL_comb48_EPIDRAFT_10693092	F080791	AGGAG	MATYQYNGDEVKEFPTLKLTVKPGDTFDSADEIISADVTLASAPKKTPTQSAAPDTTQGA

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