Basic Information | |
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Taxon OID | 3300000439 Open in IMG/M |
Scaffold ID | TBL_comb48_EPIDRAFT_1038201 Open in IMG/M |
Source Dataset Name | Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1889 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0412 | Long. (o) | -89.6864 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F024962 | Metagenome / Metatranscriptome | 203 | N |
F027744 | Metagenome / Metatranscriptome | 193 | N |
F028416 | Metagenome / Metatranscriptome | 191 | N |
Protein ID | Family | RBS | Sequence |
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TBL_comb48_EPIDRAFT_10382011 | F027744 | N/A | MNSIVKESKNNSYELGIGNTSQRVNPELPLTIAERDAVARGVVRFNIQRQHRKGRLDNLLEALDTRHGTVYDPGNVEILIEVFNTVRLIKCAFPDKSIKWELPKHRPLPLAESLEVENALIKSALEKKFFQ |
TBL_comb48_EPIDRAFT_10382012 | F028416 | GAG | MERQPVNGHAIVTRPERHPNVFRLRRTWLKVAGEALDLLNLIDVTQPNTAADNTLVFGAIFDKVKQLKRIDPDKLVNQNTMVQATVIKYDCPNCLPTDNIYLADYELDC* |
TBL_comb48_EPIDRAFT_10382014 | F024962 | AGAAG | MKILKSIIKEQVENKIDPILKEKYQENIALKLFRASIEIIRESVDRLTEMYYFDYPQYEKEDFVKEVELHVFEWKSKVQERSAENITGLDHLLSSKIIDTLEIYLEALXXTNIXERQRKLYYVDSFAAVWNHRKIEDIIRHPWSVELCRRNNWLAEMPKDN* |
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