Scaffold TBL_comb48_EPIDRAFT_1020550

Overview

Basic Information

• Taxon OID: 3300000439
• Scaffold ID: TBL_comb48_EPIDRAFT_1020550
• Source Dataset Name: Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3064
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002722	Metagenome	534	Y
F030331	Metagenome	185	Y
F080791	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
TBL_comb48_EPIDRAFT_10205502	F002722	AGGA	MSVGRTQLRSTLYSYLVGASIPTLNQIFTSFPKRINFQINAQPGQLSRSACVIFIQSERETRLAIGGATSGWKRVDFTVVLQLFHHSVQNNAEDAMTDFDTLVDNIKNTLRASHNFGDDTQVNVWQGAEPAIDCLYGEPVTSDNGATETWAEIRFDVTQMIQA*
TBL_comb48_EPIDRAFT_10205503	F080791	AGGAG	MATYIYNGDGEKEFPTLGLTVKSGDTFDSADEIVNADVTLASAPKKTTPTPVAATTTTQGA*
TBL_comb48_EPIDRAFT_10205505	F030331	AGG	MSKKITLTSGATVTIKDAEDLKVKDRNRIMRAGDKGTDAEKGIAIGNALLTTIIKEWSYDFLIPSVKEESIEELPIKDYVELMKFTEDLTKDLFPDLADSDKNRLNPDSPLDGSNA*