Scaffold TBL_comb48_EPIDRAFT_1016627

Overview

Basic Information

• Taxon OID: 3300000439
• Scaffold ID: TBL_comb48_EPIDRAFT_1016627
• Source Dataset Name: Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3588
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012455	Metagenome / Metatranscriptome	280	Y
F052985	Metagenome / Metatranscriptome	141	Y
F074868	Metagenome / Metatranscriptome	119	Y
F095359	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
TBL_comb48_EPIDRAFT_101662712	F095359	GGTGG	MTIKLGGLGQTISAYCPVCSQKMTHMCIATLGTGRTIRYAWECQPCELSLKSDKDGYAHLLTELAYYV*
TBL_comb48_EPIDRAFT_101662714	F074868	N/A	NIGLALNIPATLENRIIHDFNNGGCTSSYGLSTPQRIALLKILLGANPPKCYCVKCI*
TBL_comb48_EPIDRAFT_10166273	F052985	AGGAG	MAKHPPVNSARWHSVFADDQCKIYQDGNDDIFFKVLIKGQRPKYFYNETAHSDVARHCSDHLGFAYWSVLN*
TBL_comb48_EPIDRAFT_10166279	F012455	GGAG	MNKVNRVQELRRSNAATPIRNKKKYTRKNKYKNKFDN*