Scaffold TBL_comb48_EPIDRAFT_1014554

Overview

Basic Information

• Taxon OID: 3300000439
• Scaffold ID: TBL_comb48_EPIDRAFT_1014554
• Source Dataset Name: Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3966
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021463	Metagenome	218	Y
F075594	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
TBL_comb48_EPIDRAFT_10145541	F075594	AGGA	MSSVFTVNRDQIISLALRKLGVLELGSVPDSETVANASLALNLYVKQMETEGLKLWTVNQLVLPLTNGKTTYSIGPASQNPSVDLDTDKPLKVIQAWLRQTTVSPPVDTPVQLLSQQEYMTLGSKFSTGVANSIYYEIRQNTGNMYVYLTPDYNAAYQYDLYFMAQQPIQDINTGSSIPNFPVEWMNTLVWNLADQLAIEYSLPAGHRQEIAARAKTYREHLTDWDVESVSTFFQADLRMANLTFGQPN*
TBL_comb48_EPIDRAFT_10145543	F021463	AGTAG	VYSKNHAEDIRELRESHLDMKKAMTSIEKNLSQIKYIAIGALTVVVAQSIGLDKAIRMILGS*