Scaffold TBL_comb48_EPIDRAFT_1011655

Overview

Basic Information

• Taxon OID: 3300000439
• Scaffold ID: TBL_comb48_EPIDRAFT_1011655
• Source Dataset Name: Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4664
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051689	Metagenome	143	Y
F075662	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
TBL_comb48_EPIDRAFT_10116555	F051689	GGA	MSGLLRLDALARLFVSMCASLLPFKKFGGLLYLCNEKIHSILHSASEIMRWGSLINCSGEAAETAHKINVKGPGSNVNQRDSALGTLMTHARRKETARLMGSAIQGKNMS*
TBL_comb48_EPIDRAFT_10116557	F075662	N/A	MNSMHVIMNSLLHIIVYYYIRTLLLAGCLLNFHEGVRTQATSWIPFAWMPVYDDKLAPNRDKAGFESHTARRVRLEHEALSHVFKDWDVRTKDAMQLYWGGKILRPSKLYLAAVVVDHPQLDKFVGGGE*