Scaffold TBL_comb48_EPIDRAFT_1007439

Overview

Basic Information

• Taxon OID: 3300000439
• Scaffold ID: TBL_comb48_EPIDRAFT_1007439
• Source Dataset Name: Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6375
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020864	Metagenome / Metatranscriptome	221	Y
F025204	Metagenome / Metatranscriptome	202	Y
F039984	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
TBL_comb48_EPIDRAFT_100743914	F020864	AGGAG	MGYKSAADGVTKSGRTKGKNLGDSGPTVGIEGGKGSKGARTVTNEQLRKMGRNLARAKNQE*
TBL_comb48_EPIDRAFT_100743915	F039984	AGGAG	MATNKSVKPTPAGDYPLGHARENKDASAYTGFVYPAGGGNDIGVYKQPMPNPYPQGEVHSQGNNLDDLKISLGNNTKGYKQDNPYGVKEMRGYGAATKGRKISGKQG*
TBL_comb48_EPIDRAFT_10074394	F025204	GGA	MNDIDPILTARELATHANDIEHLQADMDKMVKEMSEIKTAIQAIQKTLAEAHGGWRLLLGVGGAAALIGAIMANLFQGFWSK*