Basic Information | |
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Taxon OID | 3300000439 Open in IMG/M |
Scaffold ID | TBL_comb48_EPIDRAFT_1001156 Open in IMG/M |
Source Dataset Name | Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 19832 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (15.38%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0412 | Long. (o) | -89.6864 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F048063 | Metagenome | 148 | N |
F066315 | Metagenome / Metatranscriptome | 126 | N |
Protein ID | Family | RBS | Sequence |
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TBL_comb48_EPIDRAFT_100115614 | F066315 | N/A | MRDQTTLLLESKYQALLESLEPEKRMFDDPNNGVELEXDDEDPNNATLHYMGYEFPVSKTYKAGVIQYIVGSIXNSKTFMAXAPDQFTKVLAALDKGEVKPQVAKAGGIASSPMSKVHRVQPGELVPVYYINPKDPRGEYLEVMRTYMTNPQAEKYILDMYRKHGQKIFLTGQEGKAHNPLYGYATDNINFKDKYSQYFDLTRWMSKMNLADYRGGHKGANIVGHRSKE* |
TBL_comb48_EPIDRAFT_100115621 | F048063 | AGGA | MSIILTCNVTGKTVKWSNQKIIDAKVAEYGSLEAFQKAYVSRGAKKKEKVKSSLLKDGEVELMKSILEEGVKMAPTGLSTKHLTAEQYAAHYKQKVDELVAAGASASEIAWMKQRLERWRS* |
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