Basic Information | |
---|---|
Taxon OID | 3300000439 Open in IMG/M |
Scaffold ID | TBL_comb48_EPIDRAFT_1000733 Open in IMG/M |
Source Dataset Name | Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 25495 |
Total Scaffold Genes | 31 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (64.52%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0412 | Long. (o) | -89.6864 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F008619 | Metagenome | 330 | Y |
F024113 | Metagenome / Metatranscriptome | 207 | Y |
F066311 | Metagenome | 126 | N |
F096492 | Metagenome | 104 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
TBL_comb48_EPIDRAFT_100073315 | F024113 | GGA | MAIFNKNSLAQVSGFDNPILAGELVWDQQTYWNLSFTNDVGPVNLTGATIDAQIVRRELSNLNDTRYGLTFDIADYVPTPAAITLTITNINATAGTCTLVIDSTAWGLMATDPELEINANNPVGYSGRVKVSFPASGPTPADDMIIFLLFIVRSDGVVVL* |
TBL_comb48_EPIDRAFT_100073319 | F008619 | GAG | MAFQNIFEIQQKMTVNNRRMVGQQVTRAGYMTTAQYLTAVPWVFTVIPHNFLYYPQVRDIIQGIDNLDRQLPETIIFNSSLLSWFTVMGGTATAATLNGTPAANTQTLALNSNGTFKAGDFIMINGYSYKITADSTGASVGIHRPLIGSPTSGTTVYVGNACTFNVVAEQCPTYSLTPMTNGAFVEWSGPFVFREYVTG* |
TBL_comb48_EPIDRAFT_100073327 | F096492 | N/A | MAIARYENINVNRVTAGVDSIGQQTTTITLAFQTRALVQDVRDSMLAAKDDRAYTKQVRFVLNFTPNTLNVSLNQFQYSVNWRNKDYKILDVLESNDRMNVTFVCYRNDPITSV* |
TBL_comb48_EPIDRAFT_10007335 | F066311 | GAGG | MISWFFEGLFYYIALLAFIAGLALYGVSYFAKLLPVIAAYALMMQIGGMVLAVGGGYFVADHKGYERRVAEDKAEIDRLNAEAREKEVQMAQAIKEKTAALRKATNAINQKQSDTFKRIDSGELRFPTSCPVQADSSTGTTGGNPSNGTESERQAVKDIVTIAAEGDIAITRLNACIAQYNNVRETINAGVK* |
⦗Top⦘ |