Basic Information | |
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Taxon OID | 3300000439 Open in IMG/M |
Scaffold ID | TBL_comb48_EPIDRAFT_1000701 Open in IMG/M |
Source Dataset Name | Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 25952 |
Total Scaffold Genes | 43 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 40 (93.02%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0412 | Long. (o) | -89.6864 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001629 | Metagenome | 660 | Y |
F005903 | Metagenome / Metatranscriptome | 386 | Y |
F016248 | Metagenome | 248 | Y |
F058000 | Metagenome | 135 | Y |
Protein ID | Family | RBS | Sequence |
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TBL_comb48_EPIDRAFT_100070110 | F058000 | AGGA | MTAVAATIQALSTIESLSNDIDTLAVLDRQIKALTVTTKGLKEVIANQYGEGKYRGEKYGVRVTIEDRKGAVDMDKLCAAFGITEEQLNSFRGESSAVIKVTPIA* |
TBL_comb48_EPIDRAFT_100070137 | F005903 | GGA | MISYDPRDMTWDQYNKLMEELFAANQLGNVPEDRWRDWVDGMNGIGYFVQSGVPDHRGFATWQDWAAQMTGIMSIAV* |
TBL_comb48_EPIDRAFT_10007014 | F001629 | GGAGG | MKLNQGKVAQGLVDDLLDKIHEYDDTLYMSTVIGVLELVKQQLINDSLEDME* |
TBL_comb48_EPIDRAFT_10007016 | F016248 | AGGA | MSEKELSPLARQLLGNNNHVKFYTQQEFDASLAIAKAEIMTVAIQTSKQVIMIERQACADLANEAGFPDLANAIINRIPSQRQ* |
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