Scaffold TBL_comb48_EPIDRAFT_1000701

Overview

Basic Information

• Taxon OID: 3300000439
• Scaffold ID: TBL_comb48_EPIDRAFT_1000701
• Source Dataset Name: Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25952
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (93.02%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001629	Metagenome	660	Y
F005903	Metagenome / Metatranscriptome	386	Y
F016248	Metagenome	248	Y
F058000	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
TBL_comb48_EPIDRAFT_100070110	F058000	AGGA	MTAVAATIQALSTIESLSNDIDTLAVLDRQIKALTVTTKGLKEVIANQYGEGKYRGEKYGVRVTIEDRKGAVDMDKLCAAFGITEEQLNSFRGESSAVIKVTPIA*
TBL_comb48_EPIDRAFT_100070137	F005903	GGA	MISYDPRDMTWDQYNKLMEELFAANQLGNVPEDRWRDWVDGMNGIGYFVQSGVPDHRGFATWQDWAAQMTGIMSIAV*
TBL_comb48_EPIDRAFT_10007014	F001629	GGAGG	MKLNQGKVAQGLVDDLLDKIHEYDDTLYMSTVIGVLELVKQQLINDSLEDME*
TBL_comb48_EPIDRAFT_10007016	F016248	AGGA	MSEKELSPLARQLLGNNNHVKFYTQQEFDASLAIAKAEIMTVAIQTSKQVIMIERQACADLANEAGFPDLANAIINRIPSQRQ*