Scaffold TBL_comb48_EPIDRAFT_1000507

Overview

Basic Information

• Taxon OID: 3300000439
• Scaffold ID: TBL_comb48_EPIDRAFT_1000507
• Source Dataset Name: Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30543
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (83.02%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040944	Metagenome / Metatranscriptome	161	Y
F043282	Metagenome / Metatranscriptome	156	Y
F085212	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
TBL_comb48_EPIDRAFT_100050715	F040944	AGGA	MNEVKTENEHLFPSGGLSIPYEVGHAITKECLIDSRNYLQSELDQWEQNPKDELNPDGYWLHPEDVVNNMKYVRAMNLLIDYFGGEHA*
TBL_comb48_EPIDRAFT_100050721	F085212	N/A	MRAFQEITPDWVGNVPNHIYYLTDNKEKMVAFYNVNSGEVKKFIKPMRFDMRYRKFKELKHK*
TBL_comb48_EPIDRAFT_100050723	F043282	AGGA	MIKVNVRDVIRSYDFKPMVGREDCFVEGVVECLTNEQGYAAYKITVTKDSWSDSEDKGRVGKIVFVPVEVSFMEYAGRVINLSRI*