Scaffold TBL_comb48_EPIDRAFT_1000039

Overview

Basic Information

• Taxon OID: 3300000439
• Scaffold ID: TBL_comb48_EPIDRAFT_1000039
• Source Dataset Name: Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 85339
• Total Scaffold Genes: 86
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (74.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015338	Metagenome / Metatranscriptome	255	Y
F024559	Metagenome / Metatranscriptome	205	Y
F026795	Metagenome / Metatranscriptome	196	Y
F063276	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
TBL_comb48_EPIDRAFT_100003928	F015338	N/A	MALKNSKPNPLNYFDLRRVEFAAPHFKYIILEKYTPNYIKMIDDWISKNLNNRYYIGQFLMLDHNNVIVYTTRVGFESEKELSFFNLACPVLQQR*
TBL_comb48_EPIDRAFT_100003947	F063276	AGGA	MQNTSIREKLETFVVAIIGIIGFGFALYWNYTHPHVTVKYDCSIAEISPDYPVQVKEGCRKLNARK*
TBL_comb48_EPIDRAFT_100003952	F024559	AGGA	MTSALLKLILGVTLIVIAITLGPLAGIWSLNTLFPILDIPYTLETWCAYFLLFGSITGLRFGLNRKKSND*
TBL_comb48_EPIDRAFT_100003960	F026795	GAGG	MEKMVVSSNIKGKTMALKNYKEYKYFENRPDVVKIFEDLEKFQDFCRLEMAPFDESHLYNRESWAWRNYEKSLRPKKPWDGQKKQWTGERKPYQGKNSRYQQ*