NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TBL_comb48_EPIDRAFT_1000024

Scaffold TBL_comb48_EPIDRAFT_1000024


Overview

Basic Information
Taxon OID3300000439 Open in IMG/M
Scaffold IDTBL_comb48_EPIDRAFT_1000024 Open in IMG/M
Source Dataset NameTrout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)106853
Total Scaffold Genes168 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)131 (77.98%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6864Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000684Metagenome / Metatranscriptome938Y
F053761Metagenome / Metatranscriptome140Y
F067750Metagenome / Metatranscriptome125Y
F074868Metagenome / Metatranscriptome119Y
F095359Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
TBL_comb48_EPIDRAFT_1000024110F067750N/AMKLYESKDWLYKRYVVERKDIVTLAKEAGCSHMTIVRYLEKYGIQKRGNR*
TBL_comb48_EPIDRAFT_100002425F074868AGGTGGMTTLNKVNIGKTLGISAKLENQIVHEFNNGGCTSSYGLSTPQRIALLKILLGGNAPKCECILCL*
TBL_comb48_EPIDRAFT_100002432F095359GGTGGMTIKLGGLGQTISAYCPVCSEKMTHMCIATLGGFSTKGTIRYAWECNACELSLKSDSTGYAHLLTEMAYYA*
TBL_comb48_EPIDRAFT_100002438F000684AGGAMTLQGYTYQIGDLFTTSRTGVTGRITKFAPISNKVTRVQLQLANGAKRFAMVKTSA*
TBL_comb48_EPIDRAFT_100002449F053761AGGAGMGARTNYTIITTSNPAQNLNVYAHWDGTESVAIMQAAIKAAMPRIKTRDTSYATRILVDQLTKHGRDSETGYGIYIGEEVDHEEQYEYKEINLINNTVTVGSMTFELNQFVEVLV*
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