NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LCrCPGB2_illDRAFT_1002061

Scaffold LCrCPGB2_illDRAFT_1002061


Overview

Basic Information
Taxon OID3300000436 Open in IMG/M
Scaffold IDLCrCPGB2_illDRAFT_1002061 Open in IMG/M
Source Dataset NameSoil microbial communities from Colorado Plateau, Greene Butte sample - Light Crust, Colorado Plateau, Green Butte
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3607
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Four Geographically Distinct Crusts In The Colorado Plateau And Sonoran Desert

Source Dataset Sampling Location
Location NameMoab, Utah
CoordinatesLat. (o)38.714972Long. (o)-109.692944Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042710Metagenome157N
F083444Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
LCrCPGB2_illDRAFT_10020613F083444GAGGMLNNMSEVFSLEEVALQDTYLLPEYGKKVIYFVTAMQGESKTFLYIGFTINLRKKFKSHHRRIEFEFLNRIGYQINISWIVLPNGIREKEGHVVRRCYIQAFEPKLNEDQNSIATVQAEELKKQFENWELRRYEYLKKEIENWEQSGDDKDTIIKKIWEVCKEPFEDKNLTLCSCKPQKTGV*
LCrCPGB2_illDRAFT_10020614F042710GGAGMAENSGENCERSQNFTASSARDCRYVDVLKARAEELGLDSDCVGDKRKRETWEAVLENHGEEKPAKPQFVPKPNQP*

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