Scaffold P_2C_Liq_1_UnCtyDRAFT_1017929

Overview

Basic Information

• Taxon OID: 3300000418
• Scaffold ID: P_2C_Liq_1_UnCtyDRAFT_1017929
• Source Dataset Name: Marine microbial community from Union City, CA, USA - Pond 2C Liquid 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1550
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location

• Location Name: Eden Landing Ponds, San Francisco, CA, USA
• Coordinates
  • Lat. (^o): 37.569167
  • Long. (^o): -122.1019
  • Depth (m): .13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026712	Metagenome / Metatranscriptome	197	Y
F031255	Metagenome / Metatranscriptome	183	N
F077286	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
P_2C_Liq_1_UnCtyDRAFT_10179291	F077286	N/A	MSKYKYTVEWEGDLTNYKQDFETLEEARIAMIMHHKRNAVIKVIRVMKRTYTFKY
P_2C_Liq_1_UnCtyDRAFT_10179293	F031255	N/A	MIKYFNEVVAELQSKGTIFGAEYRKKNGEVTKINGRFGVAKFVKGTGQSSPSVLTVWDNNRKRYTALIPDNILSVTTSGSKYVKNDEFLIEQI*
P_2C_Liq_1_UnCtyDRAFT_10179296	F026712	N/A	IIYIDIMKQTFYPTDSEQQLIMDIVINEFAQRQSPMDNYNIQEVAYRQAISDGAMRTDYYFNN*