Scaffold P_2C_Liq_1_UnCtyDRAFT_1001388

Overview

Basic Information

• Taxon OID: 3300000418
• Scaffold ID: P_2C_Liq_1_UnCtyDRAFT_1001388
• Source Dataset Name: Marine microbial community from Union City, CA, USA - Pond 2C Liquid 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 9243
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Psychroflexus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location

• Location Name: Eden Landing Ponds, San Francisco, CA, USA
• Coordinates
  • Lat. (^o): 37.569167
  • Long. (^o): -122.1019
  • Depth (m): .13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022889	Metagenome / Metatranscriptome	212	Y
F023556	Metagenome / Metatranscriptome	209	N

Sequences

Protein ID	Family	RBS	Sequence
P_2C_Liq_1_UnCtyDRAFT_10013882	F022889	N/A	MSRPVPNIYVGNSVKKRDRLSFKNFVLEVIEDTFINEFEPTSASLDSDTQTFFTLFLGPTDKSGSIPDIAGYRFTYEDLQVDNVIDYIDVFLYSVKQDSSKYDVELYDGEGNQLTTGQYASGSKEIRLIFNEDITRIPTEVDRTDFVIKGKITEIEE*
P_2C_Liq_1_UnCtyDRAFT_10013883	F023556	N/A	MNIFTLKNIMKEVNAPNSYEGIPSNKENGDRYEFNHPLYWVFKIENMRIKTLDSRLRDKRKPHARFDVFLSFTGDDSNGEVFVRSEDYNYEQVGNDFYVKLIKANFPTQDRFGNKYTLSAEDDSIFIKGDIEPIN*