Scaffold LV_Brine_h2_0102DRAFT_1005176

Overview

Basic Information

• Taxon OID: 3300000405
• Scaffold ID: LV_Brine_h2_0102DRAFT_1005176
• Source Dataset Name: Hypersaline microbial communities from Lake Vida, Antarctica - sample: Brine Hole Two 0.1-0.2 micron
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3020
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location

• Location Name: Lake Vida, Antarctica
• Coordinates
  • Lat. (^o): -77.38861
  • Long. (^o): 161.931111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F002085	Metagenome / Metatranscriptome	595	Y

Sequences

Protein ID	Family	RBS	Sequence
LV_Brine_h2_0102DRAFT_10051762	F000934	AGCAGG	MSLNLILANSESVGINDQRFVGQVVSRNQRISTSEIITVVPFAFEMKPMNYLLYSKSRGLLNSLRIPDKALPQYLNFGSTGWVNYIKYQGDLSAGQITTCQWQTGSANKNLVLGNLPTISSSFIIVRVGDFVQVGLYSYIATADVTRGSGSTVTIPVHRNLITPVTSPINAVMGEFGTTVSMGGATYTGITFQVVLRDYPTYTLIPMTNDSFIQWSGTFKAFESVL*
LV_Brine_h2_0102DRAFT_10051763	F002085	GAG	MNVIPEVVGTNNIRYADFVRVTTPDAVYRFATTPQAITVTAVDSQPFDAVGLLMKVGDTQRDIKSTANETTFTLLGIDTAMLGWVLGNQIKGSQIEAWKGFFNTDGALITTGGQGGLYQFFNGYVNSFAINEEWFEELRQFVGVISVAASSIQLILKNRTAGRFTNDNNWQFFAPGDTSMNRVSFITNINYQFGKGATANS*