Scaffold LV_Brine_h2_0102DRAFT_1001671

Overview

Basic Information

• Taxon OID: 3300000405
• Scaffold ID: LV_Brine_h2_0102DRAFT_1001671
• Source Dataset Name: Hypersaline microbial communities from Lake Vida, Antarctica - sample: Brine Hole Two 0.1-0.2 micron
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6206
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location

• Location Name: Lake Vida, Antarctica
• Coordinates
  • Lat. (^o): -77.38861
  • Long. (^o): 161.931111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034573	Metagenome	174	Y
F063707	Metagenome / Metatranscriptome	129	Y
F099311	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
LV_Brine_h2_0102DRAFT_100167113	F099311	AGGA	MAAKKNKLKTIPYLETWDTRYGKSQRIVYRKGGKFVDNTSLTALKRGERVISR*
LV_Brine_h2_0102DRAFT_100167114	F034573	AGGAG	MYRISKAVITSKEEKSAIAIGKILSDFHLDLEKVGYYLARATPYLVYRRALEVLESAQFQQDTVEQKRIEYNYDRLF*
LV_Brine_h2_0102DRAFT_10016719	F063707	GAG	MPKCLDCGNDTKFWYLEVSHKLGIYDSKGELEDVEDDYYDDVETSSGSCGKCESKNIEGKL*