NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold LV_Brine_h2_0102DRAFT_1000814

Scaffold LV_Brine_h2_0102DRAFT_1000814


Overview

Basic Information
Taxon OID3300000405 Open in IMG/M
Scaffold IDLV_Brine_h2_0102DRAFT_1000814 Open in IMG/M
Source Dataset NameHypersaline microbial communities from Lake Vida, Antarctica - sample: Brine Hole Two 0.1-0.2 micron
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)9929
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (86.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location
Location NameLake Vida, Antarctica
CoordinatesLat. (o)-77.38861Long. (o)161.931111Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F000808Metagenome / Metatranscriptome882Y
F003965Metagenome / Metatranscriptome459Y
F006385Metagenome / Metatranscriptome374Y
F011386Metagenome / Metatranscriptome291Y
F083720Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
LV_Brine_h2_0102DRAFT_100081410F000447N/AMGYIEIFRLDEQGAGWVDLSEATPSELLDLEIGLLQEGVL*
LV_Brine_h2_0102DRAFT_100081412F003965AGGMITLEINKCLEHNPMKSAISMVGDDQFTFCQDCEQNIERWYNDTDSDCLPMWTDWKVSN*
LV_Brine_h2_0102DRAFT_100081418F083720GAGMSANIYTIKTLLVGKKYHSKTLQGEILSAIIHPKAVWYKGCETYLVEIEPYSGFNTWGRKTYRTIAVKVGE*
LV_Brine_h2_0102DRAFT_100081422F006385AGGAGVILDTGTLIGICIALTGSIIAMVSFYLFNVQLQKEIHRLQIALRTERLKK*
LV_Brine_h2_0102DRAFT_100081425F000808GGAMEYTYSLTTSYDGELFHTMKVSDMLTAAEAWEKCVDFGDAKEYATYNLSDPTGKMYSKTFYRNGNVSIK*
LV_Brine_h2_0102DRAFT_10008146F011386GGAGGMKVTLTSMQGNTRDINLMTKEEVLDFIELYKSTLHKSERVRVTCDLLGINGYLQGVA*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.