Scaffold LV_Brine_h2_0102DRAFT_1000793

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LV_Brine_h2_0102DRAFT_1000793

Scaffold LV_Brine_h2_0102DRAFT_1000793

Overview

Basic Information
Taxon OID	3300000405 Open in IMG/M
Scaffold ID	LV_Brine_h2_0102DRAFT_1000793 Open in IMG/M
Source Dataset Name	Hypersaline microbial communities from Lake Vida, Antarctica - sample: Brine Hole Two 0.1-0.2 micron
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	10064
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location
Location Name	Lake Vida, Antarctica
Coordinates	Lat. (^o)	-77.38861	Long. (^o)	161.931111	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F086793	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
LV_Brine_h2_0102DRAFT_10007934	F086793	AGG	MDRTLEIILDQLRNKRIQISEAVSTGAAKDYAEYRALCGEIRGLSTTEGYILDLAKAMEQSDE*

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