Basic Information | |
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Taxon OID | 3300000405 Open in IMG/M |
Scaffold ID | LV_Brine_h2_0102DRAFT_1000771 Open in IMG/M |
Source Dataset Name | Hypersaline microbial communities from Lake Vida, Antarctica - sample: Brine Hole Two 0.1-0.2 micron |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10243 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (23.08%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Vida, Antarctica | |||||||
Coordinates | Lat. (o) | -77.38861 | Long. (o) | 161.931111 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F022145 | Metagenome | 215 | Y |
F034486 | Metagenome / Metatranscriptome | 174 | Y |
F054439 | Metagenome | 140 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
LV_Brine_h2_0102DRAFT_100077110 | F034486 | AGGA | MENEQSLKQKKIGLATSEHAPVIIELMKDCMQQVSSLIGETQWETSVNAITLDVQGKMLTTMVDHLENIRKGSLHNAQK* |
LV_Brine_h2_0102DRAFT_100077113 | F054439 | N/A | MTYIKRNGSTIKQMAYARKLFGGQGSSKKQIALDSGYSAAVSNSVSSHIENKPGFNNAMSALAIDSNNLALAAMHEFKARGFEDFSNKDLVGALNAIGGAWAKFNAVTPKKDPDNNNGTNKLRTIILQQIENQTVMPGNNPPVDVKEDAGIHSIRDAEVTESDF* |
LV_Brine_h2_0102DRAFT_10007719 | F022145 | N/A | MSKKAIELKKKDYTIQVGYSPDAIKNKMMKFISKSGDEFEISADEMSSILISQVNSNTLEATFVESDRINVVEVGRQLECVLDEDMKKGEKIRINYTHPYPIEFALIEEAYKIAKIDMSIPKVTLTMKYIEEVKAKLKPEQAEYIDNFYKSFKNIKKN* |
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