Basic Information | |
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Taxon OID | 3300000405 Open in IMG/M |
Scaffold ID | LV_Brine_h2_0102DRAFT_1000565 Open in IMG/M |
Source Dataset Name | Hypersaline microbial communities from Lake Vida, Antarctica - sample: Brine Hole Two 0.1-0.2 micron |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12667 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (83.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Vida, Antarctica | |||||||
Coordinates | Lat. (o) | -77.38861 | Long. (o) | 161.931111 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006056 | Metagenome | 382 | N |
F009733 | Metagenome | 313 | N |
F010818 | Metagenome / Metatranscriptome | 298 | Y |
F040946 | Metagenome / Metatranscriptome | 161 | N |
Protein ID | Family | RBS | Sequence |
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LV_Brine_h2_0102DRAFT_100056510 | F006056 | N/A | MTLEITLNGSVIDLALFDYDLAIAHGRSDVTSNPTASNAQLVLRGDTGPLLELADTVAIFFDGVARFTGAISDLNVSFISTTNPTAITTITAMGNLAKLGYTDVGASGYIEQSARQRVTGILDATGLDYLNAGDPDITLYAILEADAQPTTALDALGRIAQGTGATYYDDPTGRIIFEDYGNRGSTTFVGIWANQTGTWSEALGTWADYPLFPASFNLEAPGVIFAPTWAKTLTPLINDVTVTYGPDLSVTQTDSASITQYGRREYRLDTGIKTITDATTRAAGIMTAQANGLWNLGQISVLVDQLDETDTTALLNLVSGALVTVRGLPASGPYPDFNGIVEGWTDSYNNGQHIMTLSISDPRFSLQVLQWGQVAPGFTWSDVGPGSQWFEIVTQSDLVRL* |
LV_Brine_h2_0102DRAFT_100056513 | F009733 | AGGAG | VSEIDQDLHVDTVEVEPVKKKPTTPRTPKAVSETERARAIVRAKLKG* |
LV_Brine_h2_0102DRAFT_100056514 | F010818 | AGG | VPFNEVVGLVATALAALAIMGTGLVWLIRNVVRDEIKKATQPIQPGFRNGGESLADVAAKVDRIVQKLGV* |
LV_Brine_h2_0102DRAFT_10005657 | F040946 | GGA | MYPRLKIESDNHETKEVETLPVDFMMYEELAGNRPTSEQAMRLTIAYFYLEDKEPGDLKTVKSWARKNRVKVDILKDDAEPF* |
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